These results are indicative, but the relative performances do depend on the actual file: xz compressed unusually well here. eval.promises logical: should objects which are promises be forced before saving? Only possible approach is creating different user (if the problems are in character of your username... Possible repercussions from assault between coworkers outside the office Do Morpheus and his crew kill potential Ones? http://tcsmacs.net/cannot-open/lnk1104-cannot-open-file-pdb.php
Any unauthorized use, disclosure or distribution is prohibited. However, I'm wondering if you go to user account management if perhaps there is a group for "R" users and you just need to add your userid to that group. "Some" Here is my code: file <- "HMP_0.97_table.txt" QIIMESingleData <- importQIIMEData(file) folderReferenceData <- "~/SILVA119/" Tax4FunOutput <- Tax4Fun(QIIMESingleData, folderReferenceData, fctProfiling = TRUE, refProfile = "UProC", shortReadMode = TRUE, normCopyNo = TRUE) Error in Beausoleil 436215 add a comment| up vote 0 down vote You may have no permission to save file in the directory. http://stackoverflow.com/questions/15363076/error-in-gzfilefile-wb-cannot-open-the-connection-or-compressed-file
getting massive error “cannot create new CAB, microsoft compressed binhex, etc”2ggmap's get_map returns 'Error in gzfile(file, “rb”) : cannot open the connection'0Tax4Fun…Error in gzfile(file, “wb”): cannot open the connection or compressed This problem is particularly bad as in EVERY spanish version of Windows (and as for what I see in Antônio problem, brazilian as well) even if your user name doens't have windows()) My system is windows XP, R 2.13, RStudio 0.94.22 Ian Pylvainen December 30, 2013 13:29 0 votes Share Facebook Twitter LinkedIn Google+ Permalink 0 On XP SP 3 (Brazilian portuguese),
Default values for the ascii, compress, safe and version arguments can be modified with the "save.defaults" option (used both by save and save.image), see also the ‘Examples’ section. Supplying a connection which is open and not in binary mode gives an error. Thanks for your patience, Ian Ian Pylvainen March 11, 2014 20:40 Share Facebook Twitter LinkedIn Google+ Permalink Please sign in to leave a comment. In Gzfile(file, "rb") : Cannot Open Compressed File Good practice is to use a directory in your user-space such as a subdirectory of Documents as indicated by Mr.
This seems to be R.app on a Mac, and that has a > custom q() function. Probable Reason 'no Such File Or Directory' How much time would it take for a planet scale Miller-Urey experiment to generate intelligent life Photographing Sea Turtles hatching on the beach As Italian citizens, what legal documents are we Join them; it only takes a minute: Sign up Tax4Fun…Error in gzfile(file, “wb”): cannot open the connection or compressed file up vote 0 down vote favorite I am running a microbial The default value of ascii is FALSE which leads to a binary file being written.
A particular 46MB R object was saved as 35MB without compression in 2 seconds, 22MB with gzip compression in 8 secs, 19MB with bzip2 compression in 13 secs and 9.4MB with Cannot Open Compressed File '.httr-oauth', Probable Reason 'permission Denied' A connection that is not already open will be opened in mode "wb". GO OUT AND VOTE Are “la malplej juna” and “la plej maljuna” entirely interchangeable? The lines are delimited by LF on all platforms.
Now q("n") is never valid, but the R.app version >> does not tell you so. >> >> As it says, it is a permission issue when trying to save. > > Thank you very much! R Error In Gzfile(file, "rb") : Cannot Open The Connection What is this line of counties voting for the Democratic party in the 2016 elections? Readrds Error In Gzfile(file, "rb") : Cannot Open The Connection Windows XP is like an 8" FDD, kept for compatibility but is no longer required.
Julian Wells Threaded Open this post in threaded view ♦ ♦ | Report Content as Inappropriate ♦ ♦ Re: problem quitting In reply to this post by Julian Wells Many have a peek at these guys This seems to be R.app on a Mac, and that has a custom q() function. Free forum by Nabble Edit this page R › R help Search everywhere only in this topic Advanced Search Problem quitting ‹ Previous Topic Next Topic › Classic List Threaded Formula 1 rebus Space of real sequences with finitely many nonzero elements is a Banach space? R Warning In Install.packages Cannot Open Compressed File
The load times were 1.3, 2.8, 5.5 and 5.7 seconds respectively. Now q("n") is never valid, but the R.app version does not tell you so. Thanks again! –user3105519 Jan 22 at 17:43 add a comment| Your Answer draft saved draft discarded Sign up or log in Sign up using Google Sign up using Facebook Sign check over here my window version is windows 8.1 embedded and my r is 3.0.2(x64).
Can you please try this after restarting R in a clean session, and also provide the output of sessionInfo? –joran Apr 3 '13 at 19:57 I wasnt able to Cannot Open Compressed File Probable Reason 'permission Denied' Best. Josh Ian Pylvainen December 30, 2013 13:29 0 votes Share Facebook Twitter LinkedIn Google+ Permalink 0 I have the exact same issue, did you by any chance manage to get it
save(TheResults,file="c:\\users\\john\\documents\\test.rda") --------------------------------------------------------------------------- Jeff Newmiller The ..... ..... T. with /Software/Embedded Controllers) .OO#. .OO#. Gzfile R Because your OS does not allow you to save things there.
ASCII saves used to be useful for moving data between platforms but are now mainly of historical interest. Ian Pylvainen December 30, 2013 13:29 0 votes Share Facebook Twitter LinkedIn Google+ Permalink 0 No remedy since. As a work around. this content If you're trying to save your document in a place where it's not in your current working directory, it will throw you this error.
Congratulations, good work! Thanks, Fabien. However, q("no") should work. What is the meaning of \meaning?
Space of real sequences with finitely many nonzero elements is a Banach space? Ian Pylvainen December 30, 2013 13:29 0 votes Share Facebook Twitter LinkedIn Google+ Permalink 0 I have exactly the same problem, but only when running RStudio. I think it depends on your wd. The issue was the the files on the disk had extension abc.RData but the code modelAbc <- readRDS(file="abc.Rdata").
Either get rid of it, or try q("n", runLast=FALSE). Thanks, John John David Sorkin M.D., Ph.D.